Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs5992931 chr22:18455914 G/A 1.78E-7 492 30.8 31.65 27.37 KM Plot
PRAD rs5992932 chr22:18456254 C/T 1.05E-6 493 30.8 31.87 27.37 KM Plot
PRAD rs5992933 chr22:18457043 G/T 1.05E-6 493 30.8 31.87 27.37 KM Plot
PRAD rs59960592 chr9:72864310 G/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs59976188 chr9:72864200 A/T 1.91E-5 491 30.73 31.42 22.45 KM Plot
PRAD rs6011563 chr20:61678337 A/C 6.82E-6 494 30.97 30.78 24.15 KM Plot
PRAD rs6011600 chr20:61712990 A/G 1.78E-5 494 20.93 28.77 31.07 KM Plot
PRAD rs60130612 chr18:71954172 T/A 7.84E-5 487 31.27 28.23 23.07 KM Plot
PRAD rs60210731 chr7:6740583 ATTTGTTCG/A 2.35E-11 493 31.18 27.4 38.33 KM Plot
PRAD rs60220392 chr19:56092549 T/C 2.29E-5 488 31.42 27.4 22.37 KM Plot
PRAD rs60356223 chr8:104045492 C/T 9.99E-15 488 31.27 28.63 18.15 KM Plot
PRAD rs6038359 chr20:6094217 C/T 7.78E-6 491 31.27 29.05 31.77 KM Plot
PRAD rs6052047 chr20:425865 G/A 7.32E-8 494 31.27 24.13 21.2 KM Plot
PRAD rs6052053 chr20:426349 A/G 7.32E-8 494 21.2 24.13 31.27 KM Plot
PRAD rs60521056 chr8:54167074 G/A 2.73E-6 492 31.32 26.93 49.93 KM Plot